modbase.compbio.ucsf.eduModBase Search Page

University of California San Francisco | About UCSF | UCSF Benioff Children’s Hospital San Francisco ModBase: Database of Comparative Protein Structure Models Sali Lab Home ModWeb ModLoop ModBase ModEval PCSS FoXS IMP ModPipe ModBase Home ModBase Datasets for User:Anonymous User Login Help News Contact Current Datasets General Information Statistics and Genome Datasets News Project Pages Authors and Acknowledgements Publications Downloads Related Resources Please address inquiries to: MODBASE is no longer under active development , and contains theoretically calculated models, not experimentally determined structures. The models may contain significant errors. ModBase Search ModBase is a database of comparative protein structure models, calculated by our modeling pipeline ModPipe . Search type Model(Default) Sequence Similarity (Blast) Display type Model Detail (graphical) Model Overview Model Detail (schema) Sequence Overview All available datasets are selected To include the academic (comprehensive) dataset, go to Current Datasets ! Search by properties Property ALL Annotation Keywords Database Accession Number Gene Name Internal ID Template PDB Code Template or Homolog PDB Code Organism ALL Aedes aegypti Aeropyrum pernix Arabidopsis thaliana Archaeoglobus fulgidus Aspergillus oryzae Babesia bovis Bacillus subtilis Brugia malayi Burkholderia mallei Caenorhabditis elegans Candida albicans Canis familiaris Chlamydia trachomatis Clostridium difficile 630 Clostridium tetani Coxsackievirus B3 (strain Woodruff) Cryptosporidium hominis Cryptosporidium parvum Dengue virus 2 16681-PDK53 Drosophila melanogaster Echinococcus granulosus Echinococcus multilocularis Edwardsiella tarda EIB202 Entamoeba histolytica Escherichia coli Escherichia coli K12 Giardia lamblia (assemblage A) Giardia Lamblia P15 Helicobacter pylori 26695 Homo sapiens Human enterovirus 71 Human poliovirus 1 Mahoney Lactobacillus reuteri DSM 20016 Lactobacillus reuteri MM4-1A Lactobacillus reuteri SD2112 Leishmania braziliensis Leishmania donovani Leishmania infantum Leishmania major Leishmania mexicana Loa loa Methanobrevibacter ruminantium M1 Methanococcus jannaschii Methanopyrus kandleri Mus musculus Mycobacterium bovis BCG str. Pasteur 1173P2 Mycobacterium leprae Mycobacterium smegmatis str. MC2 155 Mycobacterium tuberculosis Mycobacterium tuberculosis H37Rv Mycobacterium ulcerans Mycoplasma genitalium Mycoplasma pneumoniae Nanoarchaeum equitans Neospora caninum Onchocerca volvulus Panicum virgatum Picrophilus torridus Plasmodium berghei ANKA Plasmodium falciparum Plasmodium knowlesi Plasmodium vivax Plasmodium yoelii Pseudomonas aeruginosa Pyrobaculum aerophilum Pyrococcus furiosus Rickettsia prowazekii Saccharomyces cerevisiae SARS-CoV-2 Schistosoma japonicum Schistosoma mansoni Staphylococcus aureus subsp. aureus MRSA252 Streptococcus mutans Streptococcus pyogenes Sulfolobus solfataricus Theileria parva Thermoplasma acidophilum Thermoplasma volcanium Thermus Thermophilus Toxoplasma gondii Treponema pallidum Trypanosoma brucei Trypanosoma brucei gambiense Trypanosoma congolense Trypanosoma cruzi Wolbachia Xenopus Yersinia pestis or Advanced search Model Details Example Database ID: Q12321 This page makes all models and model details for one sequence available. The current model is shown prominently Additional models are accessible through their thumbnails. Use the Perform action pull-down menu for Coordinates Alignments Various ModBase representations links to UCSF Chimera Overview Example Dengue Virus Models for several sequences are displayed on the Sequence Overview page. A coverage sketch illustrates sequence section(s) covered by a model The sketch also links to the Model Details page. Users of ModBase are requested to cite this article in their publications: MODBASE, a database of annotated comparative protein structure models and associated resources. Ursula Pieper, Benjamin M. Webb, Guang Qiang Dong, Dina Schneidman-Duhovny, Hao Fan, Seung Joong Kim, Natalia Khuri, Yannick G. Spill, Patrick Weinkam, Michal Hammel, John A. Tainer, Michael Nilges, Andrej Sali Nucleic Acids Research 42 , D336-46, 2014. MODBASE is maintained by Ben Webb in the group of Andrej Sali , Department of Bioengineering and Therapeutic Sciences and California Institute for Quantitative Biomedical Research, Mission Bay Campus, Byers Hall, University of California San Francisco, San Francisco, CA 94143. Please address all inquiries to...